PASI Summer School, Porto Alegre, July 2013

Lecture Slides

* Introduction to CompuCell3D - PPTX | PDF

* Python Scripting in CompuCell3D - PPTX | PDF

* Multi-scale modeling using SBML and CC3D - PDF

Manuals

• PASI Exercises PDF

• Python Scripting Manual for CompuCell3D 3.7.0 Download

• CompuCell3D 3.6.0 Quick Start Guide Download

• CompuCell3D 3.6.2 Reference Manual Download

• Introduction To CompuCell3D 3.6.2 Download

CC3D Simulations

* Simple cellsorting Download

* Checkerboard cellsorting Download

* Setting membrane fluctuation for each cell individually Download

* Outputting basic simulation statistics Download

* Cellsorting with simple mitosis Download

* Diffusion Calculator Download

* Simple Oscillator with Plots Download

SBW Workshop

Jarnac Tutorial

Workshop Text Book