Selected talks on CompuCell3D or CompuCell3D models

Prof. Glazier's nanoBIO webinar "Cancer Games: Interactive Simulation of the Effect of Resource Limitation on Cancer Somatic Evolution using nanoHUB CompuCell3D"

The video is here and the slide deck is available here. This demo can be run on your local machine or on nanoHUB in a Jupyter Notebook, see the slide deck for details.

For more info on the excellent nanoBIO online workshops visit this web page.

TJ Sego's IMAG/MSM Viral Pandemics Short talk

Multiscale Multicellular Spatiotemporal Modeling of Viral Infection and Immune Response A Modular, Extensible Agent-Based Framework PDF here.

Multiscale Multicellular modeling of tissue function and Covid-19 modeling webinar

Dr. Glazier's webinar describing the theory and use of Compucell3D and its application to modeling Covid-19 is available on here. The webinar is part of the University of Massachusetts Amherst Mathematical and Computational Biology Seminar Series.

We have prepared a YouTube video describing our initial Covid-19 model

This model is described in our preprint. COVID-19 Modeling in CompuCell3D

We have prepared a more detailed video describing our initial Covid-19 model

We have also given a more detailed video presentation hosted by the
Pacific Institute for the Mathematical Sciences on the use of CC3D in Covid-19 modeling.
Click on this image to view the video.
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COMBINE 2015- University of Utah, Salt Lake City, Utah

• Divide and Conquer: Using SBML to represent both the whole body and subcellular scales in a liver-centric multiscale model

2015 Multiscale Modeling Consortium Meeting, Interagency Modeling and Analysis Group- Bethesda, MD

• Tightly Coupled In Vivo Studies to Inform an In Silico Model of Acetaminophen Toxicity in Mice

• Multiscale Models in CompuCell3D

2014 Multiscale Modeling Consortium Meeting, Interagency Modeling and Analysis Group- Bethesda, MD

• Parameter Sensitivities in a Multiscale model of Acetaminophen Metabolism: from Whole-body to Subcellular Reaction Kinetics

Condensed Presentations from the conference Toward the 3D Virtual Cell- 2012, University of Washington, Seattle, WA

• James Glazier - From Molecules to Tissues: Multiscale Modeling from a Multicellular Viewpoint (poster from talk by Sophia Liang)

• Maciej Swat - Towards Virtual Tissues – Multi-cell Modeling using CompuCell3D (poster from talk by Sophia Liang)

• Jim Sluka - Optimizing Model Specification in Cross-cell Computational Biology (poster from talk by Wyn Wilson)

• Thomas Knudsen - Virtual Embryo: Computational Embryology And Predictive Toxicology (poster from talk by Sophia Liang)

• Herbert Sauro - Building Sustainable and Vibrant Communities (poster from talk by Wyn Wilson)