Welcome to CompuCell3D
CompuCell3D is an open-source simulation environment for multi-cell, single-cell-based modeling of tissues, organs and organisms.
It uses Cellular Potts Model to model cell behavior.
This project is funded by the NIH and EPA.
Compucell3D is led by Maciej Swat (IU), James Glazier(IU) and Roshan D'Souza (U.Wisc. Milwaukee)
How to cite CompuCell3D
Multi-Scale Modeling of Tissues Using CompuCell3D – M. Swat, Gilberto L. Thomas, Julio M. Belmonte, A. Shirinifard, D.Hmeljak, J. A. Glazier, Computational Methods in Cell Biology, Methods in Cell Biology 110: 325-366 (2012)
****************** Job Opportunity ******************
We are currently looking for modelers (experience in building multi-cell models is desired) to build computational models of somite formation, liver toxicity and polycystic kidney disease. We are interested in both postdoctoral level candidates as well as PhD students. For more information please email James Glazier (firstname.lastname@example.org) or Maciej Swat (email@example.com). The preferred starting date would be January 2015.
*** Latest News ***
3.7.3 version of CC3D is out
Tutorial - Multiscale, Cell-based Modelling in Biological Development and Cancer (using CompuCell3D), University of Stuttgart
- Prof. Matthias Reuss, Stuttgart Research Center Systems Biology, Germany
- Prof. Roeland Merks, CWI Amsterdam
- Dr. Holger Perfahl,Stuttgart Research Center Systems Biology, Germany
- Dr. Sonja Boas, CWI Amsterdam
- Dr. Lisanne Rens, CWI Amsterdam
August 10th—August 16th, 2014, The Hamner Institutes for Health Sciences, Research Triangle Park, NC, USA
IMPORTANT: We will host a one-day Workshop on Python Programming on Sunday, Aug 10th, 2014 that is designed to increase participants' familiarity with Python. this event is optional but if you feel you need to refresh your Python knowledge this is a good opportunity to to so. See Tentative Agenda for more details
We are pleased to announce our 10th user training workshop. From more information please visit: CompuCell3D and SBW User Training Workshop
CompuCell3D Mini-Workshop — June 14th Gothenborg, Sweden - part of ECMTB 2014
We are pleased to announce CompuCell3D mini-workshop that will take place during ECMTB 2014 international Conference (please see http://ecmtb2014.org/minisymposia for detailed schedule of the conference). It is a great opportunity to get familiar with CompuCell3D, talko to developers and fellow scientists. We are hoping to see you there!
Cellular Potts Modeling in Biology Mini-Symposium — June 18th Gothenborg, Sweden - part of ECMTB 2014
We are pleased to announce a mini-symposium on applications of Cellular Potts Model in mathematical biology. This event is a part of ECMTB 2014 international Conference (please see http://ecmtb2014.org/minisymposia for detailed schedule.
CompuCell3D Presentations from the conference Toward the 3D Virtual Cell - UC San Diego - Atkinson Hall, December 13-14, 2012.
New CompuCell Simulations have been published:
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