Welcome to CompuCell3D

CompuCell3D is an open-source simulation environment for multi-cell, single-cell-based modeling of tissues, organs and organisms.

It uses Cellular Potts Model to model cell behavior.

This project is funded by the NIH and EPA.

Compucell3D is led by Maciej Swat (IU), James Glazier(IU) and Roshan D'Souza (U.Wisc. Milwaukee)

Want to contribute to CompuCell3D developement?

We highly encourage fellow researchers to contribute to CompuCell3D code. If you have developed some useful plugin or fuctionality on CompuCell3D and would like share it with rest of us. Please commit the code and open a pull request on CompuCell3D GitHub repository. We would love to see it in next version of CompuCell3D.

Try our new CompuCell3D User Forum

CompuCell3D User Forum

Latest News

***NEW*** CC3D Version 3.7.7

We have just released CompuCell3D 3.7.7. Check out our Download page and release notes For your convenience we developed online version of Python Scripting Manual. Make sure to check a tutorial on how to use our new plotting back-end.

How to cite CompuCell3D

Multi-Scale Modeling of Tissues Using CompuCell3DM. Swat, Gilberto L. Thomas, Julio M. Belmonte, A. Shirinifard, D.Hmeljak, J. A. Glazier, Computational Methods in Cell Biology, Methods in Cell Biology 110: 325-366 (2012)

Job Opportunity

Asst/Assoc/Full Professor in Intelligent Systems Engineering

We are looking for outstanding researchers in both experimental and computational biology areas that apply to "Intelligent Systems Engineering" very broadly defined to include Computational Biology, Virtual Tissues, Tissue Engineering, Synthetic Biology, Toxicology, Computational Toxicology, Bioengineering, Biomedical Engineering, Biosensors, Organ-on-a-chip, etc.

Apply: https://indiana.peopleadmin.com/postings/1900

New Papers using CompuCell Simulations have been published:

Latest Announcements

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FrontPage (last edited 2018-01-03 14:17:02 by anwar)