*** Latest News ***

***NEW*** CC3D Version 3.7.6

We have just released CompuCell3D 3.7.6. Check out our Download page and release notes For your convenience we developed online version of Python Scripting Manual. Make sure to check a tutorial on how to use our new plotting back-end.

CompuCell3D and SBW Training Workshop, July 29th - August 4th, 2017

We are pleased to announce our annual training workshop that will take place in Bloomington, IN, USA starting on July 29th 2017 and ending on August 4th 2017. Application deadline is June 30th 2017. For more details see Workshop Page

Workshop Poster

Welcome to CompuCell3D

CompuCell3D is an open-source simulation environment for multi-cell, single-cell-based modeling of tissues, organs and organisms.

It uses Cellular Potts Model to model cell behavior.

This project is funded by the NIH and EPA.

Compucell3D is led by Maciej Swat (IU), James Glazier(IU) and Roshan D'Souza (U.Wisc. Milwaukee)

How to cite CompuCell3D

Multi-Scale Modeling of Tissues Using CompuCell3DM. Swat, Gilberto L. Thomas, Julio M. Belmonte, A. Shirinifard, D.Hmeljak, J. A. Glazier, Computational Methods in Cell Biology, Methods in Cell Biology 110: 325-366 (2012)

Job Opportunity

Asst/Assoc/Full Professor in Intelligent Systems Engineering

We are looking for outstanding researchers in both experimental and computational biology areas that apply to "Intelligent Systems Engineering" very broadly defined to include Computational Biology, Virtual Tissues, Tissue Engineering, Synthetic Biology, Toxicology, Computational Toxicology, Bioengineering, Biomedical Engineering, Biosensors, Organ-on-a-chip, etc.

Apply: https://indiana.peopleadmin.com/postings/1900

CompuCell3D Presentations from the conference Toward the 3D Virtual Cell - UC San Diego - Atkinson Hall, December 13-14, 2012.

New CompuCell Simulations have been published:

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