Welcome to CompuCell3D
CompuCell3D is an open-source simulation environment for multi-cell, single-cell-based modeling of tissues, organs and organisms.
It uses Cellular Potts Model to model cell behavior.
This project is funded by the NIH and EPA.
Compucell3D is led by Maciej Swat (IU), James Glazier(IU) and Roshan D'Souza (U.Wisc. Milwaukee)
***NEW*** CC3D Version 3.7.6
We have just released CompuCell3D 3.7.6. Check out our Download page and release notes For your convenience we developed online version of Python Scripting Manual. Make sure to check a tutorial on how to use our new plotting back-end.
CompuCell3D and SBW Training Workshop
July 29th - August 4th, 2017
We are pleased to announce our annual training workshop that will take place in Bloomington, IN, USA starting on July 29th 2017 and ending on August 4th 2017. Application deadline is June 30th 2017. For more details see the Workshop Page.
How to cite CompuCell3D
Multi-Scale Modeling of Tissues Using CompuCell3D – M. Swat, Gilberto L. Thomas, Julio M. Belmonte, A. Shirinifard, D.Hmeljak, J. A. Glazier, Computational Methods in Cell Biology, Methods in Cell Biology 110: 325-366 (2012)
Asst/Assoc/Full Professor in Intelligent Systems Engineering
We are looking for outstanding researchers in both experimental and computational biology areas that apply to "Intelligent Systems Engineering" very broadly defined to include Computational Biology, Virtual Tissues, Tissue Engineering, Synthetic Biology, Toxicology, Computational Toxicology, Bioengineering, Biomedical Engineering, Biosensors, Organ-on-a-chip, etc.
New Papers using CompuCell Simulations have been published:
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