= Workshop 18 files: =
 * [[attachment:Schedule for 2018.docx|Week's Schedule (.docx)|&do=get]] (updated Monday 3PM)

----
= Sunday Aug. 5, 2018 =
 * [[attachment:Intro To Programming_Somogyi.zip||&do=get]]

----
= Monday Aug. 6, 2018 =
 * [[attachment:SauroFiles2018CC3D.zip||&do=get]]

 * [[attachment:Introductory Network Modeling Slides_Glazier.zip||&do=get]] (not covered in class but may be useful)

 * [[attachment:CC3D Workshop Aug 2018 Mon Morning Intro to Biology for Modeling JAG.pptx|Introduction to Biology For Modeling - James Glazier (ppt)|&do=get]]

=== We have a reservation for tonight for the workshop group at; ===
Anystsang's Little Tibet Restaurant<<BR>> 415 E 4th St,<<BR>> Bloomington, IN 47408<<BR>> It's just a few blocks from Woodburn Hall. [[attachment:Directions to Little Tibet Restaurant for Monday 6_30PM.pdf|Directions|&do=get]]

----
= Tuesday Aug. 7, 2018 =
 * Morning: Herbert Sauro (tbd)
 * Afternoon: James Sluka ([[attachment:PBPK_Sluka.zip||&do=get]])

----
= Wednesday Aug. 8, 2018 =
'''Presentations'''
 * [[attachment:Intro to CC3D (Wednesday Morning - JAG)|Short Intro to CompuCell3D - James Glazier ]]
 * [[attachment:CompuCell_intro_2018_Bloomington.ppt|Intro to CompuCell3D - Maciej Swat]] 
 * [[attachment:RIo June 2017 CC3D Intro A.pptx|Intro to CompuCell3D   - example simulations -  James Glazier]] 
 * [[attachment:RIo June 2017 CC3D Intro B.pptx|Intro to CompuCell3D  -  James Glazier, Maciej Swat]] 

'''Simulations'''
 * [[attachment:my_first_simulation.zip|my_first_simulation]] 
 * [[attachment:cell_motion.zip|cell_motion]] 

----
= Thursday Aug. 9, 2018 =
'''Presentations'''

 *  [[attachment:cell_lineage.pdf|Cell Lineage - Priyom Adhyapok]]

'''Simulation'''

 * [[attachment:cell_lineage.zip|Cell Lineage Simulation - intro]]

 * [[attachment:lineage_with_everything.zip|Cell Lineage - Complete Simulation]]

 * [[attachment:diffusion_intro.zip|diffusion_intro]]

 * [[attachment:chemotaxis_intro.zip|chemotaxis intro]]

 * [[attachment:bac_macro.zip|bacterium_macrophage]]

 * [[attachment:Chemotaxis with Paramer Scan| Chemotaxis With Parameter Scan - Lambda Volume]]

 * [[attachment:Chemotaxis with Paramer Scan - Lambda Chemo| Chemotaxis With Parameter Scan - Lambda Chemo]]

 * [[attachment:epithelial_layer_demo.zip|epithelial sheet - Priyom Adhyapok]]

 * [[attachment:convergent_extension.zip|convergent extension - Priyom Adhyapok]]

----
= Friday Aug. 10, 2018 =
'''Presentations'''

 * [[attachment:CC3D Workshop Friday Intro to Cell Compartments & Links|Friday Intro Slides: CC3D Introduction to Compartments & Links]]

 * [[attachment:MultiScaleModelingWithCC3D-SBML_jps.pptx|CC3D and SBML (Cyclin cell cycle in SBML)]]

'''Demos'''

 * [[attachment:vasc_demo.zip|vascular demo]]

 * [[attachment:vascular_tumor_demo.zip|simplified vascular tumor demo]]

 * [[attachment:Final_cell_Cycle_SBML_model.zip|Final cyclin cell cycle SBML model]]



----

----
[[Workshops/Workshop18|Return to the Workshop 18 page.]]