Darwin version: Darwin Kernel Version 17.7.0: Fri Nov  2 20:43:16 PDT 2018; root:xnu-4570.71.17~1/RELEASE_X86_64  x86_64
These are demos that have given an error or have ran to completion and did not provide a performance report.
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UNEXPECTED OUTPUT[DEMO #1]: Demos/BookChapterDemos_ComputationalMethodsInCellBiology/Angiogenesis/Angiogenesis.cc3d
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OUTPUT: 

Unexpected Error: Traceback (most recent call last):
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/player5/CompuCellPythonSimulationCML.py", line 293, in <module>
    with FileLock(file_name=fileName, timeout=10, delay=0.05)  as flock:
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/FileLock.py", line 88, in __enter__
    self.acquire()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/FileLock.py", line 67, in acquire
    raise FileLockException("Timeout occured.")
FileLockException: Timeout occured.



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UNEXPECTED OUTPUT[DEMO #14]: Demos/CompuCellPythonTutorial/clusterMitosisPeriodicBC/clusterMitosisPeriodicBC.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/clusterMitosisPeriodicBC/Simulation/clusterMitosis.py", line 27, in <module>
    CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 1994, in mainLoopCML
    steppableRegistry.start()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1588, in start
    steppable.add_steering_panel()
AttributeError: VolumeParamSteppable instance has no attribute 'add_steering_panel'



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UNEXPECTED OUTPUT[DEMO #21]: Demos/CompuCellPythonTutorial/FiPyConcentrationTest/FiPyConcentrationTest.cc3d
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OUTPUT: 
CC3D encountered ImportError : No module named fipy
Traceback (most recent call last):
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/player5/CompuCellPythonSimulationCML.py", line 363, in <module>
    execfile(CompuCellSetup.simulationPaths.simulationPythonScriptName)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/FiPyConcentrationTest/Simulation/FiPyConcentrationTest.py", line 23, in <module>
    from FiPyConcentrationTestSteppables import FiPyConcentrationTestStetppable
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/FiPyConcentrationTest/Simulation/FiPyConcentrationTestSteppables.py", line 1, in <module>
    from fipy import *
ImportError: No module named fipy



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UNEXPECTED OUTPUT[DEMO #22]: Demos/CompuCellPythonTutorial/GraphVTKVis/GraphVTKVis.cc3d
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OUTPUT: 
CC3D encountered ImportError : No module named networkx
Traceback (most recent call last):
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/player5/CompuCellPythonSimulationCML.py", line 363, in <module>
    execfile(CompuCellSetup.simulationPaths.simulationPythonScriptName)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/GraphVTKVis/Simulation/GraphVTKVis.py", line 23, in <module>
    from GraphVTKVisSteppables import GraphVTKVisSteppable
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/GraphVTKVis/Simulation/GraphVTKVisSteppables.py", line 4, in <module>
    import networkx as nx
ImportError: No module named networkx



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UNEXPECTED OUTPUT[DEMO #34]: Demos/CompuCellPythonTutorial/scientificPlots/scientificPlots.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2114, in mainLoopCML
    steppableRegistry.step(current_step)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1616, in step
    steppable.step(_mcs)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/scientificPlots/Simulation/scientificPlotsSteppables.py", line 61, in step
    qwtPlotWidgetSize = qwtPlotWidget.size()
AttributeError: 'NoneType' object has no attribute 'size'



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UNEXPECTED OUTPUT[DEMO #40]: Demos/CompuCellPythonTutorial/vectorPlot/vectorPlot.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/CompuCellPythonTutorial/vectorPlot/Simulation/vectorPlot.py", line 30, in <module>
    CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 1994, in mainLoopCML
    steppableRegistry.start()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1588, in start
    steppable.add_steering_panel()
AttributeError: VectorFieldPlotTestSteppable instance has no attribute 'add_steering_panel'



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UNEXPECTED OUTPUT[DEMO #41]: Demos/experimental/FiPyConcentrationTest/FiPyConcentrationTest.cc3d
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OUTPUT: 
CC3D encountered ImportError : No module named fipy
Traceback (most recent call last):
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/player5/CompuCellPythonSimulationCML.py", line 363, in <module>
    execfile(CompuCellSetup.simulationPaths.simulationPythonScriptName)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/experimental/FiPyConcentrationTest/Simulation/FiPyConcentrationTest.py", line 23, in <module>
    from FiPyConcentrationTestSteppables import FiPyConcentrationTestStetppable
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/experimental/FiPyConcentrationTest/Simulation/FiPyConcentrationTestSteppables.py", line 1, in <module>
    from fipy import *
ImportError: No module named fipy



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UNEXPECTED OUTPUT[DEMO #42]: Demos/experimental/GraphVTKVis/GraphVTKVis.cc3d
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OUTPUT: 
CC3D encountered ImportError : No module named networkx
Traceback (most recent call last):
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/player5/CompuCellPythonSimulationCML.py", line 363, in <module>
    execfile(CompuCellSetup.simulationPaths.simulationPythonScriptName)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/experimental/GraphVTKVis/Simulation/GraphVTKVis.py", line 23, in <module>
    from GraphVTKVisSteppables import GraphVTKVisSteppable
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/experimental/GraphVTKVis/Simulation/GraphVTKVisSteppables.py", line 4, in <module>
    import networkx as nx
ImportError: No module named networkx



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UNEXPECTED OUTPUT[DEMO #52]: Demos/Models/FitzHughNagumo_OpenCL/FitzHughNagumo_OpenCL.cc3d
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OUTPUT: 
Element Plugin
Element Plugin
Element Steppable
Element Steppable
Element Potts
> > > Available platforms:
platform 0: Apple
WARNING: NVIDIA OpenCL platform not found - defaulting to first platform!

	1 device(s) avalable in platform #0


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UNEXPECTED OUTPUT[DEMO #55]: Demos/optimization/optimization_demo/optimization_demo.cc3d
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OUTPUT: 
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots
GenericDrawer or basic simulation data is None. Could not output screenshots


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UNEXPECTED OUTPUT[DEMO #57]: Demos/PluginDemos/AdhesionFlexPython/AdhesionFlexPython.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/PluginDemos/AdhesionFlexPython/Simulation/AdhesionFlex.py", line 23, in <module>
    CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 1994, in mainLoopCML
    steppableRegistry.start()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1588, in start
    steppable.add_steering_panel()
AttributeError: AdhesionMoleculesSteppables instance has no attribute 'add_steering_panel'



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UNEXPECTED OUTPUT[DEMO #81]: Demos/PluginDemos/elasticityTest_steering/elasticityTest_steering.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/PluginDemos/elasticityTest_steering/Simulation/elasticityTest_steering.py", line 27, in <module>
    CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 1994, in mainLoopCML
    steppableRegistry.start()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1588, in start
    steppable.add_steering_panel()
AttributeError: ElasticitySteering instance has no attribute 'add_steering_panel'



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UNEXPECTED OUTPUT[DEMO #85]: Demos/PluginDemos/elongationTest_steering/elongationTest_steering.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/PluginDemos/elongationTest_steering/Simulation/elongationTest_steering.py", line 27, in <module>
    CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 1994, in mainLoopCML
    steppableRegistry.start()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1588, in start
    steppable.add_steering_panel()
AttributeError: LengthConstraintSteering instance has no attribute 'add_steering_panel'



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UNEXPECTED OUTPUT[DEMO #133]: Demos/SteppableDemos/DiffusionSolverFE/diffusion_3D_scale_wall/diffusion_3D_scale_wall.cc3d
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OUTPUT: 
Element Potts
> > > SIMTHREAD= <CMLFieldHandler.CMLFieldHandler instance at 0x10cbc7bd8>
EXTRACTING restartEnabled
GOT SUSTOM SETTINGS :  /Users/jamessluka/Desktop/CC3D_3.7.9/Demos/SteppableDemos/DiffusionSolverFE/diffusion_3D_scale_wall/Simulation/_settings.sqlite
WILL RUN SIMULATION FROM BEGINNING
RUNTIME ERROR IN C++ CODE:  Exception during initialization/parsing :
Type id: 2 has already been defined
Location 
FILE :/Users/m/CC3D_QT5_GIT/CompuCell3D/core/CompuCell3D/plugins/CellType/CellTypePlugin.cpp
LINE :84


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UNEXPECTED OUTPUT[DEMO #136]: Demos/SteppableDemos/DiffusionSolverFE_OpenCL/DiffusionSolverFE_OpenCL/DiffusionSolverFE_OpenCL.cc3d
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OUTPUT: 
Element Plugin
Element Plugin
Element Steppable
Element Steppable
Element Potts
> > > Available platforms:
platform 0: Apple
WARNING: NVIDIA OpenCL platform not found - defaulting to first platform!

	1 device(s) avalable in platform #0


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UNEXPECTED OUTPUT[DEMO #137]: Demos/SteppableDemos/DiffusionSolverFE_OpenCL/DiffusionSolverFE_OpenCL_3D/DiffusionSolverFE_OpenCL_3D.cc3d
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OUTPUT: 
Platform: darwin
Did not find dl module, will try manual dl initialization...
> > > Element Plugin
Element Steppable
Element Potts
> > > Available platforms:
platform 0: Apple
WARNING: NVIDIA OpenCL platform not found - defaulting to first platform!

	1 device(s) avalable in platform #0


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UNEXPECTED OUTPUT[DEMO #149]: Demos/SteppableDemos/FlexibleDiffusionSolverFE/Steering/diffusion_steering.cc3d
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OUTPUT: 
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/Demos/SteppableDemos/FlexibleDiffusionSolverFE/Steering/Simulation/diffusion_2D_steering.py", line 24, in <module>
    CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 2253, in mainLoop
    return mainLoopCML(sim, simthread, steppableRegistry, _screenUpdateFrequency)
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/CompuCellSetup.py", line 1994, in mainLoopCML
    steppableRegistry.start()
  File "/Users/jamessluka/Desktop/CC3D_3.7.9/pythonSetupScripts/PySteppables.py", line 1588, in start
    steppable.add_steering_panel()
AttributeError: DiffusionSolverSteering instance has no attribute 'add_steering_panel'



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UNEXPECTED OUTPUT[DEMO #155]: Demos/SteppableDemos/ReactionDiffusionSolverFE_OpenCL_Implicit/ReactionDiffusion_OpenCL_Implicit_3D/ReactionDiffusion_OpenCL_Implicit_3D.cc3d
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OUTPUT: 
Platform: darwin
Did not find dl module, will try manual dl initialization...
> > > Element Plugin
Element Steppable
Element Potts
> > > Available platforms:
platform 0: Apple
WARNING: NVIDIA OpenCL platform not found - defaulting to first platform!

	1 device(s) avalable in platform #0


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UNEXPECTED OUTPUT[DEMO #156]: Demos/SteppableDemos/ReactionDiffusionSolverFE_OpenCL_Implicit/SimpleDiffusion/SimpleDiffusion.cc3d
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OUTPUT: 
Platform: darwin
Did not find dl module, will try manual dl initialization...
> > > Element Plugin
Element Steppable
Element Potts
> > > Available platforms:
platform 0: Apple
WARNING: NVIDIA OpenCL platform not found - defaulting to first platform!

	1 device(s) avalable in platform #0


