== Model Repository (Published Models) ==

[[https://compucell3d.org/SomiteMechanicalModel|A Mechanical Model of Early Somite Segmentation|target=_blannk]].

[[NanoHub|Covid-19 Modeling on nanoHUB|target="_blank"]]

[[https://github.com/aopisco/DermisMaturation|Fibroblast state switching orchestrates dermal maturation and wound healing|target="_blank"]]

[[Kumar|Proteolytic and non-proteolytic regulation of collective cell invasion: tuning by ECM density and organization (S. Kumar)|target="_blank"]]

[[FibroblastStateSwitching|Fibroblast state switching orchestrates dermal maturation and wound healing|target="_blank"]]

[[attachment:TumorEvolutionCC3DML.zip|Emergent Stratification Model - PLoS ONE 2015 paper|target="_blank"]]

[[attachment:PKD_paper_codes.zip|Code for the PKD paper|&do=get]]


<<Anchor(nanohub)>>
== Models deployed as nanoHub tools ==
[[https://github.com/JulianoGianlupi/cc3d-nanoHub-tool-setuper|Python script to help create new NanoHub tools|target="_blank"]]

[[https://nanohub.org/tools/cc3dbase4x|Main Tool (has all the bundled demos)|target="_blank"]]

[[https://nanohub.org/tools/cc3dcovid19|Covid-19 Modeling in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/tools/angiogencc3d|Simulation of angiogenesis in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/tools/cellsorthexcc3d|CompuCell3d cell sorting in a hexagonal lattice in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/tools/bacmacrocc3d4|Bacterium Macrophage simulation  in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/tools/mot2ddemocc3d|Cells random walking at different speeds in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/tools/cc3dwf|2D wet foam coarsening in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/tools/cc3dwfdrain|2D wet foam coarsening with drainage in CompuCell3D on nanoHUB|target="_blank"]]

[[https://nanohub.org/resources/36090|CC3D Slime Mold Simulation|target="_blank"]]

[[https://nanohub.org/resources/35065|Cancer Evolution in CompuCell3D|target="_blank"]]

[[https://nanohub.org/resources/35661|CompuCell3D - Simulation of cell crawling in 3D|target="_blank"]]

[[https://nanohub.org/resources/34953|FocalPointPlasticity Plugin Demo|target="_blank"]]


== Simplified Demo Model Repository (Toy Models) ==

See also the [[https://compucell3d.org/QuickModels|Quick Models page|target="_blank"]] for:
  * Track the location of a cell with a tail
  * Create a set of cells that look like fibers
  * Create a set of cells at defined locations using Python in CC3D
  * Import an image into CC3D
  * Import an image and create cells in CC3D
  * Simulating a falling cell
  * Animating CC3D results
  * Simple durotaxis model

[[attachment:bac_macro.zip|Simplified Bacteria & Macrophages|target="_blank"]]

[[attachment:cell_motion.zip|Simplified Cell Motion|target="_blank"]]

[[attachment:chemotaxis_intro.zip|Simplified Chemotaxis|target="_blank"]]

[[attachment:diffusion_intro.zip|Simplified Diffusion|target="_blank"]]

[[attachment:lineage_with_everything.zip|Cell Lineage Tracing Model|target="_blank"]]

[[attachment:my_first_simulation.zip|Simplest possible CC3D Model|target="_blank"]]

[[attachment:vasc_demo.zip|Simplified Vascular Growth Model|target="_blank"]]

[[attachment:vascular_tumor_demo.zip|Simplified Tumor Vascularization Model|target="_blank"]]