attachment:covid-tissue-response-models-master.zip of CC3D_2020_class_files

Attachment 'covid-tissue-response-models-master.zip'

File Name                                            Modified              Size
covid-tissue-response-models-master/           2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/      2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/BatchPostCoV2VTM.py 2020-07-30 07:38:40        27872
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/CallableCoV2VTM.py 2020-07-30 07:38:40         6869
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ViralInfectionVTM.py 2020-07-30 07:38:40         2589
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ViralInfectionVTM.xml 2020-07-30 07:38:40         5510
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ViralInfectionVTMLib.py 2020-07-30 07:38:40         6993
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ViralInfectionVTMModelInputs.py 2020-07-30 07:38:40        15974
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ViralInfectionVTMSteppableBasePy.py 2020-07-30 07:38:40         5838
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/Simulation/ViralInfectionVTMSteppables.py 2020-07-30 07:38:40        49791
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/ViralInfectionVTM.cc3d 2020-07-30 07:38:40          585
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/export_params.py 2020-07-30 07:38:40          424
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/nCoVToolkit/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/nCoVToolkit/__init__.py 2020-07-30 07:38:40           56
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/nCoVToolkit/nCoVSteppableBase.py 2020-07-30 07:38:40          462
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Model/nCoVToolkit/nCoVUtils.py 2020-07-30 07:38:40         1779
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/Readme.rst 2020-07-30 07:38:40         5713
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/CoronavirusModelParams.csv 2020-07-30 07:38:40         5006
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Coronavirus.cc3d 2020-07-30 07:38:40          549
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_0/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_0/ir_data.csv 2020-07-30 07:38:40         2351
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_0/med_diff_data.csv 2020-07-30 07:38:40         4242
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_0/pop_data.csv 2020-07-30 07:38:40         2643
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_0/spat_data.csv 2020-07-30 07:38:40         3494
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_1/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_1/ir_data.csv 2020-07-30 07:38:40         2366
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_1/med_diff_data.csv 2020-07-30 07:38:40         4249
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_1/pop_data.csv 2020-07-30 07:38:40         2633
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_1/spat_data.csv 2020-07-30 07:38:40         3030
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_2/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_2/ir_data.csv 2020-07-30 07:38:40         2350
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_2/med_diff_data.csv 2020-07-30 07:38:40         4259
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_2/pop_data.csv 2020-07-30 07:38:40         2640
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_2/spat_data.csv 2020-07-30 07:38:40         3487
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_3/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_3/ir_data.csv 2020-07-30 07:38:40         2349
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_3/med_diff_data.csv 2020-07-30 07:38:40         4244
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_3/pop_data.csv 2020-07-30 07:38:40         2630
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_3/spat_data.csv 2020-07-30 07:38:40         3223
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_4/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_4/ir_data.csv 2020-07-30 07:38:40         2342
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_4/med_diff_data.csv 2020-07-30 07:38:40         4246
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_4/pop_data.csv 2020-07-30 07:38:40         2642
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covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_5/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_5/ir_data.csv 2020-07-30 07:38:40         2356
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_5/med_diff_data.csv 2020-07-30 07:38:40         4250
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_5/pop_data.csv 2020-07-30 07:38:40         2635
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_5/spat_data.csv 2020-07-30 07:38:40         3159
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_6/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_6/ir_data.csv 2020-07-30 07:38:40         2353
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covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_6/pop_data.csv 2020-07-30 07:38:40         2632
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covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_7/ 2020-07-30 07:38:40            0
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covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/ValidationTests/ModelNoImmune/Model/Results/Data/run_8/ 2020-07-30 07:38:40            0
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covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/interesting-results/fire-wall-too-late/fire barrier - but too late.png 2020-07-30 07:38:40       145912
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/interesting-results/fire-wall-too-late/parameters.py 2020-07-30 07:38:40         4537
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/media/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/media/image1.png 2020-07-30 07:38:40        55617
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/media/image2.png 2020-07-30 07:38:40        28267
covid-tissue-response-models-master/CC3D/Models/BiocIU/SARSCoV2MultiscaleVTM/media/image3.png 2020-07-30 07:38:40        14211
covid-tissue-response-models-master/Readme.rst 2020-07-30 07:38:40          584
covid-tissue-response-models-master/tellurium/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/tellurium/simple_virus_model/ 2020-07-30 07:38:40            0
covid-tissue-response-models-master/tellurium/simple_virus_model/Readme.rst 2020-07-30 07:38:40          483
covid-tissue-response-models-master/tellurium/simple_virus_model/virus.py 2020-07-30 07:38:40          795
Attached Files

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[get | view] (2020-08-03 15:26:49, 2.6 KB) [[attachment:Angiogenesis.zip]]
[get | view] (2020-08-03 14:41:15, 256.1 KB) [[attachment:CC3D Course Lectures--Module 1.0 Welcome.pptx]]
[get | view] (2020-08-03 14:47:40, 7275.8 KB) [[attachment:CC3D Course Lectures--Module 1.1 Getting Tools to Run.pptx]]
[get | view] (2020-08-03 16:30:38, 348362.4 KB) [[attachment:CC3D Course Lectures--Module 1.2 Sample CC3D Simulationsv2.pptx]]
[get | view] (2020-08-03 14:57:11, 10027.3 KB) [[attachment:CC3D Course Lectures--Module 1.3 CC3D COVID Model.pptx]]
[get | view] (2020-08-03 14:56:50, 1674.5 KB) [[attachment:CC3D Course Lectures--Module 1.4 CC3D COVID Model.pptx]]
[get | view] (2020-08-04 16:11:09, 4093.6 KB) [[attachment:CC3D Course Lectures--Module 1.5 ODE Viral Infection Model in Tellurium Part II.pptx]]
[get | view] (2020-08-03 21:34:22, 6267.9 KB) [[attachment:CC3D Course Lectures--Module 1.5 ODE Viral Infection Model in Tellurium.pptx]]
[get | view] (2020-08-04 17:38:02, 67.2 KB) [[attachment:CC3D Course Lectures--Module 1.6 CC3D Models.zip]]
[get | view] (2020-08-04 17:15:43, 11084.8 KB) [[attachment:CC3D Course Lectures--Module 1.6 ODE to Spatial Models Running ODEs in CC3D and Plotting.pptx]]
[get | view] (2020-08-03 14:43:00, 63.9 KB) [[attachment:CC3D Course Lectures--Module 1.end QA.pptx]]
[get | view] (2020-08-04 15:27:26, 255.4 KB) [[attachment:CC3D Course Lectures--Module 2.0 Welcome to Day 2.pptx]]
[get | view] (2020-08-04 15:30:19, 11159.4 KB) [[attachment:CC3D Course Lectures--Module 2.1 ODE to Spatial Models Creating Epithelial Layer and Cell Type Transitions v2(1).pptx]]
[get | view] (2020-08-05 19:09:28, 13062.2 KB) [[attachment:CC3D Course Lectures--Module 2.2 ODE to Spatial Part 2 Spatializing the Virus Diffusion Solver.pptx]]
[get | view] (2020-08-05 19:32:30, 1886.6 KB) [[attachment:CC3D Course Lectures--Module 2.3 ODE to Spatial Part 3 Adding Active Immune Cells Creating Cells Volume Adhesion.pptx]]
[get | view] (2020-08-05 20:29:56, 591.8 KB) [[attachment:CC3D Course Lectures--Module 2.4 ODE to Spatial Part 4 Controlling Cell Movement Chemotaxis and Random Motility.pptx]]
[get | view] (2020-08-04 15:36:53, 63.9 KB) [[attachment:CC3D Course Lectures--Module 2.end QA.pptx]]
[get | view] (2020-08-05 14:43:53, 253.1 KB) [[attachment:CC3D Course Lectures--Module 3.0 Welcome to Day 3.pptx]]
[get | view] (2020-08-06 17:51:22, 556.6 KB) [[attachment:CC3D Course Lectures--Module 3.1 ODE to Spatial Part 5 Contact Killing.pptx]]
[get | view] (2020-08-05 14:46:33, 112.8 KB) [[attachment:CC3D Course Lectures--Module 3.2 ODE to Spatial Part 6 Beyond Base Model Tissue Recovery and Cell Division v2.pptx]]
[get | view] (2020-08-06 19:14:21, 1358.8 KB) [[attachment:CC3D Course Lectures--Module 3.5 How CC3D Does Calculations and Cell Division.pptx]]
[get | view] (2020-08-06 19:14:51, 707.9 KB) [[attachment:CC3D Course Lectures--Module 4.0 Welcome to Day 4 From Single Cell to Avascular Tumor_MaciekSwat.pptx]]
[get | view] (2020-08-05 21:10:02, 1542.1 KB) [[attachment:CC3D Course Lectures--Module 4.0 Welcome to Day 4 How CC3D Does Calculations_MaciekSwat.pptx]]
[get | view] (2020-08-06 15:36:58, 253.0 KB) [[attachment:CC3D Course Lectures--Module 4.0 Welcome to Day 4.pptx]]
[get | view] (2020-08-06 19:27:35, 24330.4 KB) [[attachment:CC3D Course Lectures--Module 4.1 - Delta-Notch Models.pptx]]
[get | view] (2020-08-06 15:37:15, 686.2 KB) [[attachment:CC3D Course Lectures--Module 4.1 From Single Cell to Avascular Tumor_MaciekSwat.pptx]]
[get | view] (2020-08-06 20:46:53, 3839.0 KB) [[attachment:CC3D Course Lectures--Module 4.2 Embryonic Segmentation and Links.ppt]]
[get | view] (2020-08-06 21:43:41, 23410.4 KB) [[attachment:CC3D Course Lectures--Module 4.3 CellCrawling.pptx]]
[get | view] (2020-08-06 21:49:50, 610.1 KB) [[attachment:CC3D Course Lectures--Module 4.3 Parameter Scans and Cluster Execution_Maciek Swat.pptx]]
[get | view] (2020-08-06 15:23:36, 1526.8 KB) [[attachment:CC3D Course Lectures--Module 4.6 Best Practices and Parameters.pptx]]
[get | view] (2020-08-07 16:13:14, 234.5 KB) [[attachment:CC3D Course Lectures--Module 4.7 Releasing CompuCell3D Models in NanoHUb.pptx]]
[get | view] (2020-08-07 14:53:46, 751.3 KB) [[attachment:CC3D Hackathon--Module 5.0 Welcomev2_JAG.pptx]]
[get | view] (2020-08-08 14:38:45, 240.3 KB) [[attachment:CC3D Hackathon--Module 6.0 Welcome.pptx]]
[get | view] (2020-08-09 15:04:49, 228.5 KB) [[attachment:CC3D Hackathon--Module 7.0 Welcome.pptx]]
[get | view] (2020-08-02 23:23:20, 186.4 KB) [[attachment:CC3D class schedule 2020 BRIEF.pdf]]
[get | view] (2020-08-05 21:36:27, 50.6 KB) [[attachment:CC3D_Theory_Simulation_Files.zip]]
[get | view] (2020-08-06 15:22:59, 1725.7 KB) [[attachment:CC3D_parameters_example.zip]]
[get | view] (2020-08-06 21:44:21, 9.6 KB) [[attachment:Cell Crawling -- Compartmental Cells.zip]]
[get | view] (2020-08-03 21:06:20, 26.4 KB) [[attachment:Exercise1.5.0.ipynb]]
[get | view] (2020-08-06 22:32:21, 10326.4 KB) [[attachment:G_Thomas_crawling_cell.mp4]]
[get | view] (2020-08-03 21:41:45, 2034.6 KB) [[attachment:How_to_write_viral_infection_model.ipynb]]
[get | view] (2020-08-06 19:40:39, 396.2 KB) [[attachment:Julio's lecture examples.zip]]
[get | view] (2020-08-07 14:54:15, 89.3 KB) [[attachment:Model Definition & Roadmapping Guide.docx]]
[get | view] (2020-08-03 18:27:21, 20.7 KB) [[attachment:Model.zip]]
[get | view] (2020-08-06 15:22:23, 342.6 KB) [[attachment:Module 4.6 Best Practices and Parameters Excercise.pdf]]
[get | view] (2020-08-04 21:32:04, 8.5 KB) [[attachment:Module_1.6.Version0.zip]]
[get | view] (2020-08-04 21:32:10, 7.6 KB) [[attachment:Module_2.1.Version1.zip]]
[get | view] (2020-08-04 21:32:18, 26.6 KB) [[attachment:Module_2.2.Version2.zip]]
[get | view] (2020-08-04 21:32:24, 5.8 KB) [[attachment:Module_2.3.Version3.zip]]
[get | view] (2020-08-04 21:32:31, 6.0 KB) [[attachment:Module_2.4.Version4.zip]]
[get | view] (2020-08-04 21:32:39, 6.2 KB) [[attachment:Module_3.1.Version5.zip]]
[get | view] (2020-08-06 21:49:16, 8.0 KB) [[attachment:ParameterScan.zip]]
[get | view] (2020-07-24 19:52:48, 99.9 KB) [[attachment:TellRoadCheatSheet.pdf]]
[get | view] (2020-08-03 15:54:39, 574.5 KB) [[attachment:Twedit menus.pdf]]
[get | view] (2020-08-03 15:54:23, 260.7 KB) [[attachment:Uploading & Downloading Files to NanoHub.pdf]]
[get | view] (2020-08-07 14:56:26, 960.6 KB) [[attachment:Workflow for Developing Mechanism-Based Computational Biology Models (Article).docx]]
[get | view] (2020-08-03 15:54:57, 370.2 KB) [[attachment:cc3d menus.pdf]]
[get | view] (2020-07-29 15:34:21, 120.9 KB) [[attachment:cc3d_quick_reference_guide.pdf]]
[get | view] (2020-08-03 19:41:38, 10628.6 KB) [[attachment:covid-tissue-response-models-master.zip]]
[get | view] (2020-08-03 15:54:06, 14.9 KB) [[attachment:example_colonic_crypt.zip]]
[get | view] (2020-08-06 20:45:55, 52.7 KB) [[attachment:priyom exercises.zip]]
[get | view] (2020-07-24 19:54:17, 1554.6 KB) [[attachment:python_cheat_sheet_py3.pdf]]
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