function y = testReadFromFile2
filename = fullfile(pwd,'test-data', 'l1v1-units.xml');
m = TranslateSBML(filename);
test = 81;
Totalfail = 0;
Totalfail = Totalfail + fail_unless(m.SBML_level == 1);
Totalfail = Totalfail + fail_unless(m.SBML_version == 1);
% /**
% *
% * ...
% * ...
% *
% */
Totalfail = Totalfail + fail_unless( length(m.unitDefinition) == 2);
Totalfail = Totalfail + fail_unless( strcmp(m.unitDefinition(1).name, 'substance'));
Totalfail = Totalfail + fail_unless( strcmp(m.unitDefinition(2).name, 'mls'));
% /**
% *
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.unitDefinition(1).unit) == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.unitDefinition(1).unit.kind, 'mole'));
Totalfail = Totalfail + fail_unless( m.unitDefinition(1).unit.exponent == 1);
Totalfail = Totalfail + fail_unless( m.unitDefinition(1).unit.scale == -3);
% /**
% *
% *
% *
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.unitDefinition(2).unit) == 3);
Totalfail = Totalfail + fail_unless( strcmp(m.unitDefinition(2).unit(1).kind, 'mole'));
Totalfail = Totalfail + fail_unless( m.unitDefinition(2).unit(1).exponent == 1);
Totalfail = Totalfail + fail_unless( m.unitDefinition(2).unit(1).scale == -3);
Totalfail = Totalfail + fail_unless( strcmp(m.unitDefinition(2).unit(2).kind, 'liter'));
Totalfail = Totalfail + fail_unless( m.unitDefinition(2).unit(2).exponent == -1);
Totalfail = Totalfail + fail_unless( m.unitDefinition(2).unit(2).scale == 0);
Totalfail = Totalfail + fail_unless( strcmp(m.unitDefinition(2).unit(3).kind, 'second'));
Totalfail = Totalfail + fail_unless( m.unitDefinition(2).unit(3).exponent == -1);
Totalfail = Totalfail + fail_unless( m.unitDefinition(2).unit(3).scale == 0);
% /**
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.compartment) == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.compartment.name, 'cell'));
% /**
% *
% *
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.species) == 4);
Totalfail = Totalfail + fail_unless( strcmp( m.species(1).name, 'x0' ));
Totalfail = Totalfail + fail_unless( strcmp( m.species(1).compartment, 'cell' ));
Totalfail = Totalfail + fail_unless( m.species(1).initialAmount == 1);
Totalfail = Totalfail + fail_unless( m.species(1).boundaryCondition == 0);
Totalfail = Totalfail + fail_unless( strcmp( m.species(2).name, 'x1' ));
Totalfail = Totalfail + fail_unless( strcmp( m.species(2).compartment, 'cell' ));
Totalfail = Totalfail + fail_unless( m.species(2).initialAmount == 1);
Totalfail = Totalfail + fail_unless( m.species(2).boundaryCondition == 0);
Totalfail = Totalfail + fail_unless( strcmp( m.species(3).name, 's1' ));
Totalfail = Totalfail + fail_unless( strcmp( m.species(3).compartment, 'cell' ));
Totalfail = Totalfail + fail_unless( m.species(3).initialAmount == 1);
Totalfail = Totalfail + fail_unless( m.species(3).boundaryCondition == 0);
Totalfail = Totalfail + fail_unless( strcmp( m.species(4).name, 's2' ));
Totalfail = Totalfail + fail_unless( strcmp( m.species(4).compartment, 'cell' ));
Totalfail = Totalfail + fail_unless( m.species(4).initialAmount == 1);
Totalfail = Totalfail + fail_unless( m.species(4).boundaryCondition == 0);
% /**
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.parameter) == 2);
Totalfail = Totalfail + fail_unless( strcmp( m.parameter(1).name, 'vm' ));
Totalfail = Totalfail + fail_unless( strcmp( m.parameter(1).units, 'mls' ));
Totalfail = Totalfail + fail_unless( m.parameter(1).value == 2);
Totalfail = Totalfail + fail_unless( strcmp( m.parameter(2).name, 'km' ));
Totalfail = Totalfail + fail_unless( m.parameter(2).value == 2);
% /**
% *
% * ...
% * ...
% * ...
% *
% */
Totalfail = Totalfail + fail_unless( length(m.reaction) == 3);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(1).name, 'v1'));
Totalfail = Totalfail + fail_unless( m.reaction(1).reversible ~= 0);
Totalfail = Totalfail + fail_unless( m.reaction(1).fast == 0);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(2).name, 'v2'));
Totalfail = Totalfail + fail_unless( m.reaction(2).reversible ~= 0);
Totalfail = Totalfail + fail_unless( m.reaction(2).fast == 0);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(3).name, 'v3'));
Totalfail = Totalfail + fail_unless( m.reaction(3).reversible ~= 0);
Totalfail = Totalfail + fail_unless( m.reaction(3).fast == 0);
% /**
% *
% *
% *
% *
% *
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.reaction(1).reactant) == 1);
Totalfail = Totalfail + fail_unless( length(m.reaction(1).product) == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(1).reactant.species, 'x0'));
Totalfail = Totalfail + fail_unless( m.reaction(1).reactant.stoichiometry == 1);
Totalfail = Totalfail + fail_unless( m.reaction(1).reactant.denominator == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(1).product.species, 's1'));
Totalfail = Totalfail + fail_unless( m.reaction(1).product.stoichiometry == 1);
Totalfail = Totalfail + fail_unless( m.reaction(1).product.denominator == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(1).kineticLaw.formula, '(vm*s1)/(km+s1)'));
% /**
% *
% *
% *
% *
% *
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.reaction(2).reactant) == 1);
Totalfail = Totalfail + fail_unless( length(m.reaction(2).product) == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(2).reactant.species, 's1'));
Totalfail = Totalfail + fail_unless( m.reaction(2).reactant.stoichiometry == 1);
Totalfail = Totalfail + fail_unless( m.reaction(2).reactant.denominator == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(2).product.species, 's2'));
Totalfail = Totalfail + fail_unless( m.reaction(2).product.stoichiometry == 1);
Totalfail = Totalfail + fail_unless( m.reaction(2).product.denominator == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(2).kineticLaw.formula, '(vm*s2)/(km+s2)'));
% /**
% *
% *
% *
% *
% *
% *
% *
% *
% *
% */
Totalfail = Totalfail + fail_unless( length(m.reaction(3).reactant) == 1);
Totalfail = Totalfail + fail_unless( length(m.reaction(3).product) == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(3).reactant.species, 's2'));
Totalfail = Totalfail + fail_unless( m.reaction(3).reactant.stoichiometry == 1);
Totalfail = Totalfail + fail_unless( m.reaction(3).reactant.denominator == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(3).product.species, 'x1'));
Totalfail = Totalfail + fail_unless( m.reaction(3).product.stoichiometry == 1);
Totalfail = Totalfail + fail_unless( m.reaction(3).product.denominator == 1);
Totalfail = Totalfail + fail_unless( strcmp(m.reaction(3).kineticLaw.formula, '(vm*s1)/(km+s1)'));
disp('Testing readFromFile2:');
disp(sprintf('Number tests: %d', test));
disp(sprintf('Number fails: %d', Totalfail));
disp(sprintf('Pass rate: %d%%\n', ((test-Totalfail)/test)*100));
if (Totalfail == 0)
y = 0;
else
y = 1;
end;
function y = fail_unless(arg)
if (~arg)
y = 1;
else
y = 0;
end;