/// /// @file TestAncestor.cs /// @brief SBML ancestor objects unit tests /// @author Frank Bergmann (Csharp conversion) /// @author Akiya Jouraku (Csharp conversion) /// @author Sarah Keating /// /// $Id: TestAncestor.cs 8704 2009-01-04 02:26:05Z mhucka $ /// $HeadURL: https://sbml.svn.sourceforge.net/svnroot/sbml/trunk/libsbml/src/bindings/csharp/test/sbml/TestAncestor.cs $ /// /// This test file was converted from src/sbml/test/TestAncestor.cpp /// with the help of conversion sciprt (ctest_converter.pl). /// /// */ namespace LibSBMLCSTest { using libsbml; using System.IO; public class TestAncestor { public class AssertionError : System.Exception { public AssertionError() : base() { } } static void assertTrue(bool condition) { if (condition == true) { return; } throw new AssertionError(); } static void assertEquals(object a, object b) { if ( (a == null) && (b == null) ) { return; } else if (a.Equals(b)) { return; } throw new AssertionError(); } static void assertNotEquals(object a, object b) { if ( (a == null) && (b == null) ) { throw new AssertionError(); } else if (a.Equals(b)) { throw new AssertionError(); } } static void assertEquals(bool a, bool b) { if ( a == b ) { return; } throw new AssertionError(); } static void assertNotEquals(bool a, bool b) { if ( a != b ) { return; } throw new AssertionError(); } static void assertEquals(int a, int b) { if ( a == b ) { return; } throw new AssertionError(); } static void assertNotEquals(int a, int b) { if ( a != b ) { return; } throw new AssertionError(); } public void test_AlgebraicRule_ancestor_create() { Model m = new Model(); AlgebraicRule r = m.createAlgebraicRule(); ListOf lo = m.getListOfRules(); assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null ); Rule obj = m.getRule(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_AssignmentRule_ancestor_create() { Model m = new Model(); AssignmentRule r = m.createAssignmentRule(); ListOf lo = m.getListOfRules(); assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null ); Rule obj = m.getRule(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_CompartmentType_ancestor_add() { CompartmentType ct = new CompartmentType(); Model m = new Model(); m.addCompartmentType(ct); ct = null; ListOf lo = m.getListOfCompartmentTypes(); CompartmentType obj = m.getCompartmentType(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_CompartmentType_ancestor_create() { Model m = new Model(); CompartmentType ct = m.createCompartmentType(); ListOf lo = m.getListOfCompartmentTypes(); assertTrue( ct.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ct.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ct.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ct.getAncestorOfType(libsbml.SBML_EVENT) == null ); CompartmentType obj = m.getCompartmentType(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Compartment_ancestor_add() { Compartment c = new Compartment(); Model m = new Model(); m.addCompartment(c); c = null; ListOf lo = m.getListOfCompartments(); Compartment obj = m.getCompartment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Compartment_ancestor_create() { Model m = new Model(); Compartment c = m.createCompartment(); ListOf lo = m.getListOfCompartments(); assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( c.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( c.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( c.getAncestorOfType(libsbml.SBML_EVENT) == null ); Compartment obj = m.getCompartment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Constraint_ancestor_add() { Constraint ct = new Constraint(); Model m = new Model(); m.addConstraint(ct); ct = null; ListOf lo = m.getListOfConstraints(); Constraint obj = m.getConstraint(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Constraint_ancestor_create() { Model m = new Model(); Constraint ct = m.createConstraint(); ListOf lo = m.getListOfConstraints(); assertTrue( ct.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ct.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ct.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ct.getAncestorOfType(libsbml.SBML_EVENT) == null ); Constraint obj = m.getConstraint(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Delay_ancestor_add() { Delay d = new Delay(); Event e = new Event(); e.setDelay(d); d = null; Delay obj = e.getDelay(); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); e = null; } public void test_EventAssignment_ancestor_add() { Event e = new Event(); EventAssignment ea = new EventAssignment(); e.addEventAssignment(ea); ea = null; ListOf lo = e.getListOfEventAssignments(); EventAssignment obj = e.getEventAssignment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_EventAssignment_ancestor_create() { Event e = new Event(); EventAssignment ea = e.createEventAssignment(); ListOf lo = e.getListOfEventAssignments(); assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); EventAssignment obj = e.getEventAssignment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_EventAssignment_ancestor_create_model() { Model m = new Model(); Event e = m.createEvent(); EventAssignment ea = m.createEventAssignment(); ListOf lo = e.getListOfEventAssignments(); assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); EventAssignment obj = e.getEventAssignment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_Event_ancestor_add() { Event e = new Event(); Model m = new Model(); m.addEvent(e); e = null; ListOf lo = m.getListOfEvents(); Event obj = m.getEvent(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_Event_ancestor_create() { Model m = new Model(); Event e = m.createEvent(); ListOf lo = m.getListOfEvents(); assertTrue( e.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( e.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( e.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( e.getAncestorOfType(libsbml.SBML_PARAMETER) == null ); Event obj = m.getEvent(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_FunctionDefinition_ancestor_add() { FunctionDefinition fd = new FunctionDefinition(); Model m = new Model(); m.addFunctionDefinition(fd); fd = null; ListOf lo = m.getListOfFunctionDefinitions(); FunctionDefinition obj = m.getFunctionDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_FunctionDefinition_ancestor_create() { Model m = new Model(); FunctionDefinition fd = m.createFunctionDefinition(); ListOf lo = m.getListOfFunctionDefinitions(); assertTrue( fd.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( fd.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( fd.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( fd.getAncestorOfType(libsbml.SBML_EVENT) == null ); FunctionDefinition obj = m.getFunctionDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_InitialAssignment_ancestor_add() { InitialAssignment ia = new InitialAssignment(); Model m = new Model(); m.addInitialAssignment(ia); ia = null; ListOf lo = m.getListOfInitialAssignments(); InitialAssignment obj = m.getInitialAssignment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_InitialAssignment_ancestor_create() { Model m = new Model(); InitialAssignment ia = m.createInitialAssignment(); ListOf lo = m.getListOfInitialAssignments(); assertTrue( ia.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ia.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ia.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ia.getAncestorOfType(libsbml.SBML_EVENT) == null ); InitialAssignment obj = m.getInitialAssignment(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_KineticLaw_Parameter_ancestor_add() { KineticLaw kl = new KineticLaw(); Parameter p = new Parameter("jake"); kl.addParameter(p); p = null; ListOfParameters lop = kl.getListOfParameters(); Parameter obj = kl.getParameter(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); kl = null; } public void test_KineticLaw_Parameter_ancestor_create() { KineticLaw kl = new KineticLaw(); Parameter p = kl.createParameter(); assertTrue( kl.getNumParameters() == 1 ); ListOfParameters lop = kl.getListOfParameters(); assertTrue( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ); assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ); assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); Parameter obj = kl.getParameter(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); kl = null; } public void test_KineticLaw_Parameter_ancestor_create_model() { Model m = new Model(); Reaction r = m.createReaction(); KineticLaw kl = m.createKineticLaw(); Parameter p = m.createKineticLawParameter(); assertTrue( kl.getNumParameters() == 1 ); ListOfParameters lop = kl.getListOfParameters(); assertTrue( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ); assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ); assertTrue( p.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( p.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); Parameter obj = kl.getParameter(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); kl = null; } public void test_KineticLaw_ancestor_add() { KineticLaw kl = new KineticLaw(); Reaction r = new Reaction(); r.setKineticLaw(kl); KineticLaw obj = r.getKineticLaw(); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); r = null; } public void test_KineticLaw_ancestor_create() { Reaction r = new Reaction(); KineticLaw kl = r.createKineticLaw(); assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( kl.getAncestorOfType(libsbml.SBML_DELAY) == null ); assertTrue( kl.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); KineticLaw obj = r.getKineticLaw(); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DELAY) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); r = null; } public void test_KineticLaw_ancestor_create_model() { Model m = new Model(); Reaction r = m.createReaction(); KineticLaw kl = r.createKineticLaw(); assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( kl.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( kl.getAncestorOfType(libsbml.SBML_DELAY) == null ); assertTrue( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); KineticLaw obj = r.getKineticLaw(); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DELAY) == null ); r = null; } public void test_Model_ancestor_add() { SBMLDocument d = new SBMLDocument(); Model m = new Model(); d.setModel(m); assertTrue( d == d.getModel().getAncestorOfType(libsbml.SBML_DOCUMENT) ); d = null; } public void test_Model_ancestor_create() { SBMLDocument d = new SBMLDocument(); Model m = d.createModel(); assertTrue( m.getAncestorOfType(libsbml.SBML_DOCUMENT) == d ); Model obj = d.getModel(); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == d ); d = null; } public void test_Parameter_ancestor_add() { Parameter ia = new Parameter(); Model m = new Model(); m.addParameter(ia); ia = null; ListOf lo = m.getListOfParameters(); Parameter obj = m.getParameter(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Parameter_ancestor_create() { Model m = new Model(); Parameter p = m.createParameter(); ListOf lo = m.getListOfParameters(); assertTrue( p.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( p.getAncestorOfType(libsbml.SBML_EVENT) == null ); Parameter obj = m.getParameter(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_RateRule_ancestor_create() { Model m = new Model(); RateRule r = m.createRateRule(); ListOf lo = m.getListOfRules(); assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null ); Rule obj = m.getRule(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Reaction_ancestor_add() { Reaction ia = new Reaction(); Model m = new Model(); m.addReaction(ia); ia = null; ListOf lo = m.getListOfReactions(); Reaction obj = m.getReaction(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Reaction_ancestor_create() { Model m = new Model(); Reaction r = m.createReaction(); ListOf lo = m.getListOfReactions(); assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null ); Reaction obj = m.getReaction(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Rule_ancestor_add() { Rule ia = new RateRule("a"); Model m = new Model(); m.addRule(ia); ia = null; ListOf lo = m.getListOfRules(); Rule obj = m.getRule(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_SpeciesReference_Modifier_ancestor_add() { ModifierSpeciesReference sr = new ModifierSpeciesReference(); Reaction r = new Reaction(); r.addModifier(sr); sr = null; ListOf lo = r.getListOfModifiers(); ModifierSpeciesReference obj = r.getModifier(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Modifier_ancestor_create() { Reaction r = new Reaction(); ModifierSpeciesReference sr = r.createModifier(); ListOf lo = r.getListOfModifiers(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); ModifierSpeciesReference obj = r.getModifier(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Modifier_ancestor_create_model() { Model m = new Model(); Reaction r = m.createReaction(); ModifierSpeciesReference sr = m.createModifier(); ListOf lo = r.getListOfModifiers(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); ModifierSpeciesReference obj = r.getModifier(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Product_ancestor_add() { SpeciesReference sr = new SpeciesReference(); Reaction r = new Reaction(); r.addProduct(sr); sr = null; ListOf lo = r.getListOfProducts(); SpeciesReference obj = r.getProduct(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Product_ancestor_create() { Reaction r = new Reaction(); SpeciesReference sr = r.createProduct(); ListOf lo = r.getListOfProducts(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); SpeciesReference obj = r.getProduct(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Product_ancestor_create_model() { Model m = new Model(); Reaction r = m.createReaction(); SpeciesReference sr = m.createProduct(); ListOf lo = r.getListOfProducts(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); SpeciesReference obj = r.getProduct(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Reactant_ancestor_add() { SpeciesReference sr = new SpeciesReference(); Reaction r = new Reaction(); r.addReactant(sr); sr = null; ListOf lo = r.getListOfReactants(); SpeciesReference obj = r.getReactant(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Reactant_ancestor_create() { Reaction r = new Reaction(); SpeciesReference sr = r.createReactant(); ListOf lo = r.getListOfReactants(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); SpeciesReference obj = r.getReactant(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesReference_Reactant_ancestor_create_model() { Model m = new Model(); Reaction r = m.createReaction(); SpeciesReference sr = m.createReactant(); ListOf lo = r.getListOfReactants(); assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); SpeciesReference obj = r.getReactant(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); } public void test_SpeciesType_ancestor_add() { SpeciesType ia = new SpeciesType(); Model m = new Model(); m.addSpeciesType(ia); ia = null; ListOf lo = m.getListOfSpeciesTypes(); SpeciesType obj = m.getSpeciesType(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_SpeciesType_ancestor_create() { Model m = new Model(); SpeciesType st = m.createSpeciesType(); ListOf lo = m.getListOfSpeciesTypes(); assertTrue( st.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( st.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( st.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( st.getAncestorOfType(libsbml.SBML_EVENT) == null ); SpeciesType obj = m.getSpeciesType(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Species_ancestor_add() { Species ia = new Species(); Model m = new Model(); m.addSpecies(ia); ia = null; ListOf lo = m.getListOfSpecies(); Species obj = m.getSpecies(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Species_ancestor_create() { Model m = new Model(); Species s = m.createSpecies(); ListOf lo = m.getListOfSpecies(); assertTrue( s.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( s.getAncestorOfType(libsbml.SBML_EVENT) == null ); Species obj = m.getSpecies(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_StoichiometryMath_ancestor_add() { StoichiometryMath m = new StoichiometryMath(); SpeciesReference sr = new SpeciesReference(); sr.setStoichiometryMath(m); m = null; StoichiometryMath obj = sr.getStoichiometryMath(); assertTrue( obj.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); sr = null; } public void test_Trigger_ancestor_add() { Trigger d = new Trigger(); Event e = new Event(); e.setTrigger(d); d = null; Trigger obj = e.getTrigger(); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); e = null; } public void test_UnitDefinition_ancestor_add() { UnitDefinition ia = new UnitDefinition(); Model m = new Model(); m.addUnitDefinition(ia); ia = null; ListOf lo = m.getListOfUnitDefinitions(); UnitDefinition obj = m.getUnitDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_UnitDefinition_ancestor_create() { Model m = new Model(); UnitDefinition ud = m.createUnitDefinition(); ListOf lo = m.getListOfUnitDefinitions(); assertTrue( ud.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( ud.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( ud.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( ud.getAncestorOfType(libsbml.SBML_EVENT) == null ); UnitDefinition obj = m.getUnitDefinition(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null ); } public void test_Unit_ancestor_add() { UnitDefinition ud = new UnitDefinition(); Unit u = new Unit(); ud.addUnit(u); u = null; assertTrue( ud.getNumUnits() == 1 ); ListOf lo = ud.getListOfUnits(); Unit obj = ud.getUnit(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); ud = null; } public void test_Unit_ancestor_create() { UnitDefinition ud = new UnitDefinition(); Unit u = ud.createUnit(); assertTrue( ud.getNumUnits() == 1 ); ListOf lo = ud.getListOfUnits(); assertTrue( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ); assertTrue( u.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( u.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( u.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); Unit obj = ud.getUnit(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); ud = null; } public void test_Unit_ancestor_create_model() { Model m = new Model(); UnitDefinition ud = m.createUnitDefinition(); Unit u = m.createUnit(); assertTrue( ud.getNumUnits() == 1 ); ListOf lo = ud.getListOfUnits(); assertTrue( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ); assertTrue( u.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( u.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( u.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( u.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); Unit obj = ud.getUnit(0); assertTrue( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ); assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ); assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null ); assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ); assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null ); ud = null; } } }