///
/// @file TestRDFAnnotation.cs
/// @brief fomula units data unit tests
/// @author Frank Bergmann (Csharp conversion)
/// @author Akiya Jouraku (Csharp conversion)
/// @author Ben Bornstein
///
/// $Id: TestRDFAnnotation.cs 8704 2009-01-04 02:26:05Z mhucka $
/// $HeadURL: https://sbml.svn.sourceforge.net/svnroot/sbml/trunk/libsbml/src/bindings/csharp/test/annotation/TestRDFAnnotation.cs $
///
/// This test file was converted from src/sbml/test/TestRDFAnnotation.cpp
/// with the help of conversion sciprt (ctest_converter.pl).
///
/// */
namespace LibSBMLCSTest {
using libsbml;
using System.IO;
public class TestRDFAnnotation {
public class AssertionError : System.Exception
{
public AssertionError() : base()
{
}
}
static void assertTrue(bool condition)
{
if (condition == true)
{
return;
}
throw new AssertionError();
}
static void assertEquals(object a, object b)
{
if ( (a == null) && (b == null) )
{
return;
}
else if (a.Equals(b))
{
return;
}
throw new AssertionError();
}
static void assertNotEquals(object a, object b)
{
if ( (a == null) && (b == null) )
{
throw new AssertionError();
}
else if (a.Equals(b))
{
throw new AssertionError();
}
}
static void assertEquals(bool a, bool b)
{
if ( a == b )
{
return;
}
throw new AssertionError();
}
static void assertNotEquals(bool a, bool b)
{
if ( a != b )
{
return;
}
throw new AssertionError();
}
static void assertEquals(int a, int b)
{
if ( a == b )
{
return;
}
throw new AssertionError();
}
static void assertNotEquals(int a, int b)
{
if ( a != b )
{
return;
}
throw new AssertionError();
}
private SBMLDocument d;
private OStringStream OSS;
private Model m;
private XMLOutputStream XOS;
public double util_NaN()
{
double z = 0.0;
return 0.0/z;
}
public double util_PosInf()
{
double z = 0.0;
return 1.0/z;
}
public double util_NegInf()
{
double z = 0.0;
return -1.0/z;
}
public bool equals(string s)
{
return s == OSS.str();
}
public bool equals(string s1, string s2)
{
return (s1 ==s2);
}
public void setUp()
{
OSS = new OStringStream();
XOS = new XMLOutputStream(OSS);
string filename = "../../annotation/test/test-data/annotation.xml";
d = libsbml.readSBML(filename);
m = d.getModel();
}
public void tearDown()
{
}
public void test_RDFAnnotation_delete()
{
XMLNode node = RDFAnnotationParser.parseCVTerms(m.getCompartment(0));
XMLNode n1 = RDFAnnotationParser.deleteRDFAnnotation(node);
string expected = "\n" + "";;
assertTrue( n1.getNumChildren() == 0 );
assertTrue( n1.getName() == "annotation" );
n1.write(XOS);
assertEquals( true, equals(expected) );
node = null;
}
public void test_RDFAnnotation_deleteWithOther()
{
Compartment c = m.getCompartment(1);
XMLNode node = RDFAnnotationParser.deleteRDFAnnotation(c.getAnnotation());
string expected = "\n" +
"\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
"";
node.write(XOS);
assertEquals( true, equals(expected) );
}
public void test_RDFAnnotation_deleteWithOutOther()
{
Compartment c = m.getCompartment(2);
XMLNode node = c.getAnnotation();
string expected = "\n" +
"\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
"";
node.write(XOS);
assertEquals( true, equals(expected) );
}
public void test_RDFAnnotation_getModelHistory()
{
assertTrue( ! (m == null) );
ModelHistory history = m.getModelHistory();
assertTrue( history != null );
ModelCreator mc = (history.getCreator(0));
assertTrue(( "Le Novere" == mc.getFamilyName() ));
assertTrue(( "Nicolas" == mc.getGivenName() ));
assertTrue(( "lenov@ebi.ac.uk" == mc.getEmail() ));
assertTrue(( "EMBL-EBI" == mc.getOrganisation() ));
Date date = history.getCreatedDate();
assertTrue( date.getYear() == 2005 );
assertTrue( date.getMonth() == 2 );
assertTrue( date.getDay() == 2 );
assertTrue( date.getHour() == 14 );
assertTrue( date.getMinute() == 56 );
assertTrue( date.getSecond() == 11 );
assertTrue( date.getSignOffset() == 0 );
assertTrue( date.getHoursOffset() == 0 );
assertTrue( date.getMinutesOffset() == 0 );
assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() ));
date = history.getModifiedDate();
assertTrue( date.getYear() == 2006 );
assertTrue( date.getMonth() == 5 );
assertTrue( date.getDay() == 30 );
assertTrue( date.getHour() == 10 );
assertTrue( date.getMinute() == 46 );
assertTrue( date.getSecond() == 2 );
assertTrue( date.getSignOffset() == 0 );
assertTrue( date.getHoursOffset() == 0 );
assertTrue( date.getMinutesOffset() == 0 );
assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() ));
}
public void test_RDFAnnotation_parseCVTerms()
{
XMLNode node = RDFAnnotationParser.parseCVTerms(m.getCompartment(0));
assertTrue( node.getNumChildren() == 1 );
XMLNode rdf = node.getChild(0);
assertTrue(( "RDF" == rdf.getName() ));
assertTrue(( "rdf" == rdf.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() ));
assertTrue( rdf.getNumChildren() == 1 );
XMLNode desc = rdf.getChild(0);
assertTrue(( "Description" == desc.getName() ));
assertTrue(( "rdf" == desc.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() ));
assertTrue( desc.getNumChildren() == 1 );
XMLNode is1 = desc.getChild(0);
assertTrue(( "is" == is1.getName() ));
assertTrue(( "bqbiol" == is1.getPrefix() ));
assertTrue( is1.getNumChildren() == 1 );
XMLNode Bag = is1.getChild(0);
assertTrue(( "Bag" == Bag.getName() ));
assertTrue(( "rdf" == Bag.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() ));
assertTrue( Bag.getNumChildren() == 4 );
XMLNode li = Bag.getChild(0);
assertTrue(( "li" == li.getName() ));
assertTrue(( "rdf" == li.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() ));
assertTrue( li.getNumChildren() == 0 );
XMLNode li1 = Bag.getChild(1);
assertTrue(( "li" == li1.getName() ));
assertTrue(( "rdf" == li1.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() ));
assertTrue( li1.getNumChildren() == 0 );
XMLNode li2 = Bag.getChild(2);
assertTrue(( "li" == li2.getName() ));
assertTrue(( "rdf" == li2.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() ));
assertTrue( li2.getNumChildren() == 0 );
XMLNode li3 = Bag.getChild(3);
assertTrue(( "li" == li3.getName() ));
assertTrue(( "rdf" == li3.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() ));
assertTrue( li3.getNumChildren() == 0 );
node = null;
}
public void test_RDFAnnotation_parseModelHistory()
{
XMLNode node = RDFAnnotationParser.parseModelHistory(m);
assertTrue( node.getNumChildren() == 1 );
XMLNode rdf = node.getChild(0);
assertTrue(( "RDF" == rdf.getName() ));
assertTrue(( "rdf" == rdf.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() ));
assertTrue( rdf.getNumChildren() == 1 );
XMLNode desc = rdf.getChild(0);
assertTrue(( "Description" == desc.getName() ));
assertTrue(( "rdf" == desc.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() ));
assertTrue( desc.getNumChildren() == 3 );
XMLNode creator = desc.getChild(0);
assertTrue(( "creator" == creator.getName() ));
assertTrue(( "dc" == creator.getPrefix() ));
assertTrue(( "http://purl.org/dc/elements/1.1/" == creator.getURI() ));
assertTrue( creator.getNumChildren() == 1 );
XMLNode Bag = creator.getChild(0);
assertTrue(( "Bag" == Bag.getName() ));
assertTrue(( "rdf" == Bag.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() ));
assertTrue( Bag.getNumChildren() == 1 );
XMLNode li = Bag.getChild(0);
assertTrue(( "li" == li.getName() ));
assertTrue(( "rdf" == li.getPrefix() ));
assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() ));
assertTrue( li.getNumChildren() == 3 );
XMLNode N = li.getChild(0);
assertTrue(( "N" == N.getName() ));
assertTrue(( "vCard" == N.getPrefix() ));
assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() ));
assertTrue( N.getNumChildren() == 2 );
XMLNode Family = N.getChild(0);
assertTrue(( "Family" == Family.getName() ));
assertTrue(( "vCard" == Family.getPrefix() ));
assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() ));
assertTrue( Family.getNumChildren() == 1 );
XMLNode Given = N.getChild(1);
assertTrue(( "Given" == Given.getName() ));
assertTrue(( "vCard" == Given.getPrefix() ));
assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() ));
assertTrue( Given.getNumChildren() == 1 );
XMLNode EMAIL = li.getChild(1);
assertTrue(( "EMAIL" == EMAIL.getName() ));
assertTrue(( "vCard" == EMAIL.getPrefix() ));
assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() ));
assertTrue( EMAIL.getNumChildren() == 1 );
XMLNode ORG = li.getChild(2);
assertTrue(( "ORG" == ORG.getName() ));
assertTrue(( "vCard" == ORG.getPrefix() ));
assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() ));
assertTrue( ORG.getNumChildren() == 1 );
XMLNode Orgname = ORG.getChild(0);
assertTrue(( "Orgname" == Orgname.getName() ));
assertTrue(( "vCard" == Orgname.getPrefix() ));
assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() ));
assertTrue( Orgname.getNumChildren() == 1 );
XMLNode created = desc.getChild(1);
assertTrue(( "created" == created.getName() ));
assertTrue(( "dcterms" == created.getPrefix() ));
assertTrue(( "http://purl.org/dc/terms/" == created.getURI() ));
assertTrue( created.getNumChildren() == 1 );
XMLNode cr_date = created.getChild(0);
assertTrue(( "W3CDTF" == cr_date.getName() ));
assertTrue(( "dcterms" == cr_date.getPrefix() ));
assertTrue(( "http://purl.org/dc/terms/" == cr_date.getURI() ));
assertTrue( cr_date.getNumChildren() == 1 );
XMLNode modified = desc.getChild(2);
assertTrue(( "modified" == modified.getName() ));
assertTrue(( "dcterms" == modified.getPrefix() ));
assertTrue(( "http://purl.org/dc/terms/" == modified.getURI() ));
assertTrue( modified.getNumChildren() == 1 );
XMLNode mo_date = created.getChild(0);
assertTrue(( "W3CDTF" == mo_date.getName() ));
assertTrue(( "dcterms" == mo_date.getPrefix() ));
assertTrue(( "http://purl.org/dc/terms/" == mo_date.getURI() ));
assertTrue( mo_date.getNumChildren() == 1 );
node = null;
}
public void test_RDFAnnotation_recreate()
{
Compartment c = m.getCompartment(1);
string expected = "\n" +
"\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
"";
c.write(XOS);
assertEquals( true, equals(expected) );
}
public void test_RDFAnnotation_recreateFromEmpty()
{
Compartment c = m.getCompartment(3);
string expected = "\n" +
"\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
"";
c.write(XOS);
assertEquals( true, equals(expected) );
}
public void test_RDFAnnotation_recreateWithOutOther()
{
Compartment c = m.getCompartment(2);
string expected = "\n" +
"\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
"";
c.write(XOS);
assertEquals( true, equals(expected) );
}
}
}