= PASI Summer School, Porto Alegre, July 2013 =

== Lecture Slides ==

* [[BinDoc/cc3d_binaries/Presentations/Introduction_To_CompuCell/CompuCell_intro_2013_PortoAlegre.ppt|Introduction to CompuCell3D - PPTX]] | [[BinDoc/cc3d_binaries/Presentations/Introduction_To_CompuCell/CompuCell_intro_2013_PortoAlegre.pdf|PDF]]

* [[BinDoc/cc3d_binaries/Presentations/Introduction_To_CompuCell/PythonScriptingInCompuCell_2013_PortoAlegre.ppt|Python Scripting in CompuCell3D - PPTX]] | [[BinDoc/cc3d_binaries/Presentations/Introduction_To_CompuCell/PythonScriptingInCompuCell_2013_PortoAlegre.pdf|PDF]]

*  [[BinDoc/cc3d_binaries/Tutorials/PASI2013/MultiScaleModelingWithCC3D-SBML.pdf|Multi-scale modeling using SBML and CC3D - PDF]]


== Manuals ==

 * PASI Exercises [[BinDoc/cc3d_binaries/Manuals/PASI_compucell3d_quickstartguide_2.0.pdf|PDF]]

 * Python Scripting Manual for CompuCell3D 3.7.0 [[BinDoc/cc3d_binaries/Manuals/PythonScriptingManual_v.3.7.0.pdf|Download]] 

 * CompuCell3D 3.6.0 Quick Start Guide [[BinDoc/cc3d_binaries/Manuals/compucell3d_quickstartguide_1.5.pdf|Download]]

 * CompuCell3D 3.6.2 Reference Manual [[BinDoc/cc3d_binaries/Manuals/CompuCell3D_Reference_Manual_v.3.6.2.pdf|Download]]

 * Introduction To CompuCell3D 3.6.2 [[BinDoc/cc3d_binaries/Manuals/Introduction_To_CompuCell3D_v.3.6.2.pdf|Download]]

== CC3D Simulations ==

* Simple cellsorting [[BinDoc/cc3d_binaries/Tutorials/PASI2013/Sorting.zip|Download]]

* Checkerboard cellsorting  [[BinDoc/cc3d_binaries/Tutorials/PASI2013/SortingCheckerboard.zip|Download]]

* Setting membrane fluctuation for each cell individually  [[BinDoc/cc3d_binaries/Tutorials/PASI2013/SortingFluctAmpl.zip|Download]]

* Outputting basic simulation statistics [[BinDoc/cc3d_binaries/Tutorials/PASI2013/SortingSimStatData.zip|Download]]

* Cellsorting with simple mitosis [[BinDoc/cc3d_binaries/Tutorials/PASI2013/SortingMItosis.zip|Download]]

* Diffusion Calculator [[BinDoc/cc3d_binaries/Tutorials/PASI2013/DiffusionCalculator.zip|Download]]

* Simple Oscillator with Plots [[BinDoc/cc3d_binaries/Tutorials/PASI2013/SBMLSolverOscilatorDemo.zip|Download]]


== SBW Workshop ==

[[Workshops/Workshop13?action=AttachFile&do=get&target=JarnacTutorial.pdf|Jarnac Tutorial]]

[[Workshops/Workshop13?action=AttachFile&do=get&target=PASITextBook.pdf|Workshop Text Book]]